CDS

Accession Number TCMCG068C20105
gbkey CDS
Protein Id KAG5587976.1
Location complement(join(54632001..54632239,54633438..54633546,54633640..54633721,54634434..54634573,54635461..54635544,54636254..54636358,54636433..54636570,54636653..54636764,54637014..54637084,54637533..54637651,54637878..54637941,54638652..54638749,54638951..54639083,54639799..54639822,54639982..54640452))
Organism Solanum commersonii
locus_tag H5410_048410

Protein

Length 662aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA655804, BioSample:SAMN15755581
db_source JACXVP010000009.1
Definition hypothetical protein H5410_048410 [Solanum commersonii]
Locus_tag H5410_048410

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAATGATCAAAGTTGGGCCAGTTGGAAGCCTTAAAGGATCCATATGGGAAGAAAATGGACGAGGCGAAGTTGCTGGGATTTTTGTTTCCTACGCCGAAGACACAATTCAGTCGCTTCAGTTCCTGTTCTATGAGGATGGCAACTTTGTTCAGTCAAATAAGCATGGCTGCGCCAACTCTGCAAACTTCTCTGCAGTTGTGCTTGATTATCCATCAGAGTTTCTTACTTCGCTTAGCGGTTCCTATCAGAATTACGGAGGTTTGGAAGCTATTAAATTTAACACCAACAAGGGTTCCTATGGACCATTTGGGCAGCCTACAAGTGGTGCCAATCACTTCAACTTTCAGTTAGGAAATCATAGTCTTTTTGGTGGTTTTCATGGCACCAAGAGTGATTATGTCGTTGAGAGTATTGGGATCTATGTTAAGTCAGTCGTATCCTCCATGATCAACTTGAAAGATCTTCGAACTCCACTTGGTGGATTTTATATGCCAGTCCCTCCAAAAATGTCCCTCTCTCTTCTCCGACACACTGCAAATCTCTCTTCACTTCCATTCCCAATTCAATTCATCTCCTTTACAGCAATGCCCAAAACACGACGAAATCCTCTTCTGCGAAACCCAGGTTCTGAAGATGATGGTGTTGTTCCCAAGAACAGAGTGAGAAAAAGAAGAGTGGAAATGATAGCTAAAGAGGTGAAGACAGAATCTCCAGAAAAGAAACTTCTCAGGCATCCAGAAATTGAAGATTTTGCAAATAAAAGTGACAATATTTACTCTCAGTCAATACAACCTCCTGCCAACTGGGAAAGGGTCATTGAAGGTATTCGCAGCATGAGATTATCAGAACATGCACCTGTAGACTCCATTGACCCCGATGAAGGGATGACTTCTCTTCAACCTAAGGAAAGAAGATTTGCTGTTCTGGTTGGTTCATTGTTATCAAGCCAGACCAAGGGTCATGTTACTCATGGCAAGATGCCCTCTGAATCTGCAGAAGCGAATCAACGGCTCCTCGAAAATGGTTTGCTGAGTGCTGACACAATGGATAAAGCTGATGAAGCCACCATAAAGAGCTTGATATACCCGGTTGGATTTTACACAAGAAAGGCTCAGCACCTTAAACAAGTTGCAAAGATTTGTGTTTCTAAATATGATGGAGACATTCCAAGTACAGTGGACGAGTTGATTCTACTTCCAGGTGTTGGTCCCAAGATAGCTCACCTGGTTATGATTATGGCATGGAACAAAGTTGAAGGGATTTGTGTAGATACCCACGTGCATCGTGTTAGCAATCGGCTTGGTTGGGTCTCACGGCCTGGAACAAAACAGGCAACTAGATCCCCCGAAGAGACTAGGGTCTCCTTGCAGCAGTGGCTTCCTAAAGAAGAATGGGTTTCCATTAATTTACTTTTGGTAGGCTTTGGACAGACCATATGTACTCCTCTGAGACCTCGCTGTGCAAAATGTACAATAAGTAAATTCTGCCCATCGGCATTTAAGGAGATATCAAGCCCAGCTTCCACTTCCAAAACACGACGCCCCAAGAAAGAACTAAATATGGATATGGTCAAAGTTGATCCAGCCAAAGGAAAAGGACAAATTGGAACCCTTTGGGATGAAAAAGGGCAAGGACAGAAACATGGTGTTGATGGCGGTGAACACTTCAAATCAGTTGTTTTTGATTATCCATCAGAGTTTCTTACTTCGATAAGTGGTTCATTCCGATCATTGAGGAATGATGATAGAAGAGATATGGATATGATCAAAGTTGGTCCAGCAGGCAAACAAGGACGATCTGCAACCATTTGGGATGAAAAAGGACGAAGAGAAATAGCACAGATTTTCATTTCCTATGATTGTAACACAGTTTATTCATTTCACTTTCTCTTCTACGACGAGTATGGCAAATTACTGTCTCAAAAACACGGTAGCGAAGGTGCTGACAGTTCAAACTTAGATTCAGTTGCTTTTGATTATCCATAG
Protein:  
MEMIKVGPVGSLKGSIWEENGRGEVAGIFVSYAEDTIQSLQFLFYEDGNFVQSNKHGCANSANFSAVVLDYPSEFLTSLSGSYQNYGGLEAIKFNTNKGSYGPFGQPTSGANHFNFQLGNHSLFGGFHGTKSDYVVESIGIYVKSVVSSMINLKDLRTPLGGFYMPVPPKMSLSLLRHTANLSSLPFPIQFISFTAMPKTRRNPLLRNPGSEDDGVVPKNRVRKRRVEMIAKEVKTESPEKKLLRHPEIEDFANKSDNIYSQSIQPPANWERVIEGIRSMRLSEHAPVDSIDPDEGMTSLQPKERRFAVLVGSLLSSQTKGHVTHGKMPSESAEANQRLLENGLLSADTMDKADEATIKSLIYPVGFYTRKAQHLKQVAKICVSKYDGDIPSTVDELILLPGVGPKIAHLVMIMAWNKVEGICVDTHVHRVSNRLGWVSRPGTKQATRSPEETRVSLQQWLPKEEWVSINLLLVGFGQTICTPLRPRCAKCTISKFCPSAFKEISSPASTSKTRRPKKELNMDMVKVDPAKGKGQIGTLWDEKGQGQKHGVDGGEHFKSVVFDYPSEFLTSISGSFRSLRNDDRRDMDMIKVGPAGKQGRSATIWDEKGRREIAQIFISYDCNTVYSFHFLFYDEYGKLLSQKHGSEGADSSNLDSVAFDYP